In figure 2.8 we have used the zoom tools to zoom all the way in on a SNV that is found in a coding region.įigure 2. It consists of the following tracks, all tied to the human hg19 reference: genomic sequence, gene, coding sequence (CDS), a read mapping, and variants. To illustrate this a Genome Browser view is shown in figure 2.8 to figure 2.13.
in GFF of VCF format, from resources not provided for download by Biomedical Genomics Workbench can be imported into the Navigation Area using the import option found in the toolbar: Each track in a Genome Browser view is tied to the same underlying genomic co-ordinate set, making visualization and comparison of different results and data types simple and intuitive.Īnnotations and variant information are provided together with the human reference genome via our Data Management. The Genome Browser view is a collection of tracks. Introduction to customized data analysis.Identify and Annotate Differentially Expressed Genes and Pathways.Identify variants and add expression values.Identify Candidate Variants and Genes from Tumor Normal Pair.Identify and Annotate Variants (TAS-HD).Identify Rare Disease Causing Mutations in Trio (TAS).Identify Rare Disease Causing Mutations in Family of Four (TAS).Identify Causal Inherited Variants in Trio (TAS).Identify Causal Inherited Variants in Family of Four (TAS).Identify Somatic Variants from Tumor Normal Pair (TAS).Identify Known Variants in One Sample (TAS).Identify and Annotate Variants (WES-HD).Identify Rare Disease Causing Mutations in Trio (WES).Identify Rare Disease Causing Mutations in Family of Four (WES).Identify Causal Inherited Variants in Trio (WES).Identify Causal Inherited Variants in Family of Four (WES).Identify Somatic Variants from Tumor Normal Pair (WES).Identify Known Variants in One Sample (WES).Identify Rare Disease Causing Mutations in Trio (WGS).Identify Rare Disease Causing Mutations in Family of Four (WGS).Identify Causal Inherited Variants in Trio (WGS).Identify Causal Inherited Variants in Family of Four (WGS).Identify Somatic Variants from Tumor Normal Pair (WGS).Identify Known Variants in One Sample (WGS).Output from the Prepare Overlapping Raw Data and Prepare Raw Data workflows.
Where reference data is downloaded from.Ready-to-Use Workflows descriptions and guidelines.Introduction to user interface, workflows, and tracks.Contact for the Biomedical Genomics Workbench.We welcome your comments and suggestions.Introduction to Biomedical Genomics Workbench.Welcome to Biomedical Genomics Workbench.